calcQuanLRcomparison {casesolver}R Documentation

calcQuanLRcomparison

Description

Function calculating LR using EuroForMix for remaining matches (from Step 1)

Usage

calcQuanLRcomparison(DBmix, DBref, matchlist, popFreq, kit, xi, pC, lambda,
  threshT, nDone = 4, maxC = 3, nContr = NULL)

Arguments

DBmix

A list with evidence information [[sample]][[loc]] = list(adata,hdata)

DBref

A (nR x nL) matrix with reference information. LIST not efficient

matchlist

A matrix with overview of what references are matches each of samples (SampleName,Reference,MAC)

popFreq

A list of allele frequencies for a given population.

kit

Used to model degradation. Must be one of the shortnames of kit: "ESX17","ESI17","ESI17Fast","ESX17Fast","Y23","Identifiler","NGM","ESSPlex","ESSplexSE","NGMSElect","SGMPlus","ESX16", "Fusion","GlobalFiler".

pC

A numeric for allele drop-in probability. Default is 0.

lambda

Parameter in modeled peak height shifted exponential model. Default is 0.

threshT

The detection threshold given. Used when considering probability of allele drop-outs.

nDone

Maximum number of random evaluations nlm-optimizing routing. Default is 4.

maxC

Maximum number of contributors possible to assume. Default is 3.

nContr

A vector of number of contributors for each of the row in the matchlist. If NULL (default), the max(nA)/2 rule is applied.


[Package casesolver version 1.4.0 Index]