calcQuanLRcomparison {casesolver} | R Documentation |
Function calculating LR using EuroForMix for remaining matches (from Step 1)
calcQuanLRcomparison(DBmix, DBref, matchlist, popFreq, kit, xiBW = 0, xiFW = 0, pC = 0.05, lambda = 0.01, threshT = 50, nDone = 4, maxC = 3, nContr = NULL, normalize = FALSE, minFreq = NULL)
DBmix |
A list with evidence information [[sample]][[loc]] = list(adata,hdata) |
DBref |
A (nR x nL) matrix with reference information. LIST not efficient |
matchlist |
A matrix with overview of what references are matches each of samples (SampleName,Reference,MAC) |
popFreq |
A list of allele frequencies for a given population. |
kit |
Used to model degradation. Must be one of the shortnames of kit: Returned by euroformix::getKit() |
xiBW |
Model parameter for Backward stutter. NULL indicates stutter model. |
xiFW |
Model parameter for Forward stutter. NULL indicates stutter model. |
pC |
A numeric for allele drop-in probability. |
lambda |
Parameter in modeled peak height shifted exponential model. |
threshT |
The detection threshold given. |
nDone |
Maximum number of random evaluations nlm-optimizing routing. Default is 4. |
maxC |
Maximum number of contributors possible to assume. Default is 3. |
nContr |
A vector of number of contributors for each of the row in the matchlist. If NULL (default), the max(nA)/2 rule is applied. |
normalize |
A boolean of whether normalization should be applied or not. |
minFreq |
The freq value included for new alleles. Default NULL is using min.observed in popFreq. |