validMLEmodel {euroformix}R Documentation

validMLEmodel

Description

validMLEmodel makes model validation whether the observed peak heights fits the maximum likelihood fitted gamma distribution.

Usage

validMLEmodel(mlefit, kit = NULL, plottitle = "PP-plot", alpha = 0.01)

Arguments

mlefit

Fitted object using contLikMLE

kit

Shortname of kit used

plottitle

Maintitle text used in the PP-plot

alpha

The significance level used for the envelope test. Default is 0.01

Details

The cumulative probability of the observed allele peaks are calculated and compared with a uniform distribution. Function calls procedure in c++ by using the package Armadillo and Boost.

Value

ret A vector for each marker with cumulative probabilities

Author(s)

Oyvind Bleka


[Package euroformix version 1.11.3 Index]