simDOdistr {euroformix} | R Documentation |
MCMC Allele dropout distribution sampler based on total number of alleles in an evidence.
simDOdistr(totA, nC, popFreq, refData = NULL, M = 1000, minS = 2000, prC = 0, pDknown = rep(NA, nC))
totA |
Total number of allele-observations in evidence. |
nC |
Number of contributors to assume in the preposition. |
popFreq |
Population frequencies listed for each loci popFreq[[locname]] |
refData |
List with alleles to condition on. ref[[locname]][[referencename]]=(A1,A2) |
M |
is number of samples for each iteration. |
minS |
is number of minimum accepted samples. |
prC |
Assumed drop-in probability |
pDknown |
A vector of known drop-out probabilities for each contributors. Default is NA which means it is unknown. |
simDOdistr samples from the drop-out distribution based on total number of alleles in evidence under a specified prepositions. It returns if no samples was accepted in first iteration
Vector with accepted samples from the dropout distribution
Oyvind Bleka